PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 223aa    MW: 25784.8 Da    PI: 5.8136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-075983125
                     TSSS-HHHHHHHHHHHHHTTTT-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWk 25
                     +g+W +eEd++++d+v+++G+  W+
         EMT28005 59 KGPWIQEEDDKIIDLVRKYGPTKWS 83
                     79**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.45E-103484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-43465IPR009057Homeodomain-like
PROSITE profilePS500906.8995483IPR017877Myb-like domain
CDDcd001676.89E-46184No hitNo description
Gene3DG3DSA:1.10.10.603.7E-86685IPR009057Homeodomain-like
SMARTSM002121.5E-4679222No hitNo description
PfamPF001792.1E-4385218IPR000608Ubiquitin-conjugating enzyme E2
PROSITE profilePS5012739.95586215IPR000608Ubiquitin-conjugating enzyme E2
SuperFamilySSF544959.99E-4986219IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd001955.65E-5386217No hitNo description
Gene3DG3DSA:3.10.110.102.2E-5886218IPR016135Ubiquitin-conjugating enzyme/RWD-like
PROSITE patternPS001830153168IPR023313Ubiquitin-conjugating enzyme, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPWIAHQPGM CFDDNPSRIL LVPIFYTNVY LMAAELFLDR TEVQYLHPWQ KVLNPELIKG  60
PWIQEEDDKI IDLVRKYGPT KWSHCKDLQK DPPTSAQEGP VGEDMFQWQA TIMGPLDSPF  120
TGGLFLVNIH FPLDYPFKPP KVSFRTKVFH FHFHPNINSN GNICLDILKE QWSPTLTISK  180
VLLSIYLLLT DPNPNDPLVP EIAHMYKTDW AKYELTASYS CPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x57_A5e-738621742169Ubiquitin-conjugating enzyme E2 8
4x57_C5e-738621742169Ubiquitin-conjugating enzyme E2 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7361211e-126AY736121.1 Triticum aestivum ubiquitin-conjugating enzyme mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240579.13e-75PREDICTED: ubiquitin-conjugating enzyme E2 28
SwissprotP351352e-74UBC4_SOLLC; Ubiquitin-conjugating enzyme E2-17 kDa
TrEMBLM8BSM21e-166M8BSM2_AEGTA; Ubiquitin-conjugating enzyme E2-17 kDa
STRINGBRADI5G25460.18e-75(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-22myb domain protein 3r-5